PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000137733
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 404aa    MW: 45198.9 Da    PI: 8.9232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000137733genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.25.1e-1395141146
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwd 46 
                    + pGfrF+Ptdeel+++yLk+k+eg    +  evi+evdi+ +eP d
  MDP0000137733  95 MFPGFRFSPTDEELISYYLKNKLEGPVpGKSVEVISEVDICXFEPCD 141
                    579*********************9886444588***********87 PP

2NAM93.14.6e-2920728450128
            NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +v ++e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++++s +++++g+k+tLvf+ grapkge+t+W+mhey +
  MDP0000137733 207 SVIQSENEWFFFSPRGRKYPNGSQSRRATEFGYWKATGKERNIKS-SSNVIGTKRTLVFHIGRAPKGERTEWIMHEYCI 284
                    4456789**************************************.999****************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-1385145IPR003441NAC domain
PROSITE profilePS5100542.76895300IPR003441NAC domain
PfamPF023657.3E-2497283IPR003441NAC domain
SuperFamilySSF1019412.48E-33207299IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MLCSIGVSKT LKNLAALSQT DQPGHAIVRQ RRQEKAKHKT QTQTQTQLSV KALLTFMSLL  60
LFLAKKRNSR ETETKKEEMG AVSKEAQLSI AASSMFPGFR FSPTDEELIS YYLKNKLEGP  120
VPGKSVEVIS EVDICXFEPC DSVELESMFY GVFEFLVNVF VTFYRPLFIL SRALTLGTAW  180
SSLQYRLGLN LGTMRLHDYG FSILSKSVIQ SENEWFFFSP RGRKYPNGSQ SRRATEFGYW  240
KATGKERNIK SSSNVIGTKR TLVFHIGRAP KGERTEWIMH EYCINDKPQD SMVVCRLRKN  300
SEFRLNDTTN GGSSSRTPLS TMQNDGSAVS EIGNDQGDKA VECNSKKSTS SHDSHSIEQI  360
DSASDSYPKP VTDAMQTDSN GHQKVVEINS AAPPASLQAW ESII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D7e-2719129952167NAC domain-containing protein 19
3swp_C7e-2719129952167NAC domain-containing protein 19
3swp_B7e-2719129952167NAC domain-containing protein 19
3swp_A7e-2719129952167NAC domain-containing protein 19
3swm_D7e-2719129952167NAC domain-containing protein 19
3swm_C7e-2719129952167NAC domain-containing protein 19
3swm_B7e-2719129952167NAC domain-containing protein 19
3swm_A7e-2719129952167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372812.11e-176PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
SwissprotQ9XIN79e-55NAC40_ARATH; NAC domain-containing protein 40
TrEMBLM5WBR11e-111M5WBR1_PRUPE; Uncharacterized protein
STRINGGLYMA13G39090.26e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.15e-55NTM1-like 8